Interaction of Plant-Environment Lab
Plant Gene Set Enrichment / GO analysis
http://structuralbiology.cau.edu.cn/PlantGSEA/
GO analysis_AgriGO
http://systemsbiology.cau.edu.cn/agriGOv2/index.php
Heatmap
http://www1.heatmapper.ca/expression/
Design of qRT-PCR primers
http://atrtprimer.kaist.ac.kr/
Multiple protein sequences alignment
http://www.ebi.ac.uk/Tools/msa/muscle/
ePLANT
http://bar.utoronto.ca/eplant/
Tissue, specific expression similar to bar.
http://efp.ucr.edu/cgi-bin/relative.cgi (another cell type specific expression browser)
String - protein-protein interaction
Mapman
http://mapman.gabipd.org/web/guest
qPCR primer design
http://www.quantprime.de/?page=home
Scripture
http://www.broadinstitute.org/software/scripture/
lncRNA genome brower
http://chualab.rockefeller.edu/cgi-bin/gb2/gbrowse/arabidopsis/
Plant small RNA target finder
http://plantgrn.noble.org/psRNATarget/
RNA secondary structure prediction
http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi
Dnase-Seq
Brassica database
http://brassicadb.org/brad/index.php
Protein subcellular localization
http://www.csbio.sjtu.edu.cn/bioinf/Cell-PLoc-2/
Circadian clock
http://diurnal.mocklerlab.org/
Positive / negative selection
Arabidopsis bulk sequence download
http://www.arabidopsis.org/tools/bulk/sequences/index.jsp
CRISPR gRNA design
http://chopchop.cbu.uib.no/search.php
http://www.e-crisp.org/E-CRISP/index.html
Brassica rapa (Chiifu-401) genome database
Transmembrane domain prediction
http://www.ch.embnet.org/software/TMPRED_form.html
http://www.cbs.dtu.dk/services/TMHMM/
AlBERTO AraBidopsis Embryonic and Root Transcriptome brOwser
http://albertodb.org/#nav-start
Melting Curve Prediction
https://www.dna.utah.edu/umelt/um.php
Phylogenic tree generator
http://www.trex.uqam.ca/index.php?action=newick&project=trex
Heatmap
http://www.heatmapper.ca/expression/
https://software.broadinstitute.org/morpheus
Plot